Species:
Choose
Paramecium tetraurelia strain 51
Paramecium tetraurelia strain d4-2
Paramecium biaurelia strain V1-4
Paramecium sexaurelia strain AZ8-4
Paramecium caudatum strain 43c3d
Paramecium decaurelia strain 223
Paramecium dodecaurelia strain 274
Paramecium jenningsi strain M
Paramecium novaurelia strain TE
Paramecium octaurelia strain K8
Paramecium primaurelia strain Ir4-2
Paramecium quadecaurelia strain NiA
Paramecium tredecaurelia strain 209
Paramecium octaurelia strain 138
Paramecium primaurelia strain AZ9-3
Paramecium pentaurelia strain 87
Paramecium sonneborni strain ATCC_30995
Feature type :
Choose
Gene(s)
Internal Eliminated Sequence(s)
Filters
Output
== General filters ==
Gene accession(s)
One accession per line
or File with gene accession(s)
Browse...
One accession per line (accepted file format CSV, TSV)
Keywords
separated by spaces
Gene type
No selection
Coding Gene
Non Coding Gene
== Sequence properties ==
Gene length (nt)
DNA GC content (%)
Protein length
== Protein domains ==
Predicted Transmembrane helices
No selection
Required
Absent
Predicted signal peptide
No selection
Required
Absent
INTERPRO accession(s)
One accession per line
Pfam accession(s)
One accession per line
GO term accession(s)
One accession per line
== Whole genome duplication (WGD) ==
Has paralog from the recent WGD
No selection
Yes
No
Has paralog(s) from the intermediate WGD
No selection
Yes
No
Has paralog(s) from the old WGD
No selection
Yes
No
== mRNA expression ==
Differentially expressed during autogamy time course
No selection
Yes
No
Autogamy time course expression group
No selection
Early peak
Intermediate peak
Late peak
Late induction
Early repression
Late repression
none
== mRNA expression ==
Differentially expressed during autogamy time course
No selection
Yes
No
Autogamy time course expression group
No selection
Early peak
Early induction
Intermediate induction
Late induction
Early repression
Late repression
none
Differentially expressed during reciliation
No selection
Yes
No
Reciliation expression group profil
No selection
Peak
Induction
Repression
none
Differentially expressed during trichocyst exocytosis recovery
No selection
Yes
No
Trichocyst exocytosis recovery expression group profil
No selection
Up-regulation
Down-regulation
none
== Proteomic expression ==
Cilia Mass spectrometry analysis
No selection
Yes
No
Infraciliary Lattice Mass spectrometry analysis
No selection
Yes
No
Cilia membrane mass spectrometry analysis
No selection
Yes
No
== General properties ==
Name
Description
Aliases
Gene type
Chromosome/Reference
Gene start
Gene end
Strand
Nucleotide length
Cross references
Number of IESs within gene
== Transcription units ==
Transcription Start Site
Transcription Terminal Site
5p UTR length
3p UTR length
Coding sequence length
Number of introns
Number of exons
== Protein prediction ==
Protein name
Amino acid length
Molecular weight
Isoelectric point
Protein domains
InterPro accessions
InterPro description
InterPro cross reference
Pfam accessions
Pfam description
Pfam cross reference
Predicted Transmembrane helices
Predicted signal peptide
GO terms
GO Terms (Biological Process)
GO Terms (Cellular Components)
GO Terms (Molecular Function)
GO Term descriptions (Biological Process)
GO Term descriptions (Cellular Components)
GO Term descriptions (Molecular Function)
== Sequence ==
Nucleotide sequence
G+C content
Protein sequence
== Whole genome duplication ==
Has WGD1 paralog
WGD1 paralog
Has WGD2 paralog(s)
WGD2 paralog(s)
Has WGD3 paralog(s)
WGD3 paralog(s)
== Orthology ==
Athaliana
Has Athaliana orthologs
Athaliana orthologs
Celegans
Has Celegans orthologs
Celegans orthologs
Creinhardtii
Has Creinhardtii orthologs
Creinhardtii orthologs
Cintestinalis
Has Cintestinalis orthologs
Cintestinalis orthologs
Drerio
Has Drerio orthologs
Drerio orthologs
Ddiscoideum
Has Ddiscoideum orthologs
Ddiscoideum orthologs
Dmelanogaster
Has Dmelanogaster orthologs
Dmelanogaster orthologs
Ecoli
Has Ecoli orthologs
Ecoli orthologs
Glamblia
Has Glamblia orthologs
Glamblia orthologs
Hsapiens
Has Hsapiens orthologs
Hsapiens orthologs
Imultifiliis
Has Imultifiliis orthologs
Imultifiliis orthologs
Mmusculus
Has Mmusculus orthologs
Mmusculus orthologs
Otrifallax
Has Otrifallax orthologs
Otrifallax orthologs
Pfalciparum
Has Pfalciparum orthologs
Pfalciparum orthologs
Scerevisiae
Has Scerevisiae orthologs
Scerevisiae orthologs
Spombe
Has Spombe orthologs
Spombe orthologs
Scoeruleus
Has Scoeruleus orthologs
Scoeruleus orthologs
Slemnae
Has Slemnae orthologs
Slemnae orthologs
Tthermophila
Has Tthermophila orthologs
Tthermophila orthologs
== mRNA expression ==
During autogamy time course (RNA-seq)
Differentially expressed during autogamy time course
Autogamy time course expression group
VEG : Vegetative cells (expression level)
MEI : Begining of macronuclear fragmentation and micronuclear meiosis (expression level)
FRG : Population in which about 50% of cells have a fragmented old macronucleus (expression level)
DEV1 : Earliest stage at which a significant proportion of cells has visible macronuclear anlage (expression level)
DEV2/3 : Majority of cells with macronuclear anlage (expression level)
DEV4 : Majority of cells with macronuclear anlage (expression level)
== mRNA expression ==
During autogamy time course (microarray)
Differentially expressed during autogamy time course
Autogamy time course expression group profil
VEG : Vegetative cells (expression level)
MEI : Begining of macronuclear fragmentation and micronuclear meiosis (expression level)
FRG : Population in which about 50% of cells have a fragmented old macronucleus (expression level)
DEV1 : Earliest stage at which a significant proportion of cells has visible macronuclear anlage (expression level)
DEV2 : Majority of cells with macronuclear anlage (expression level)
DEV3 : Population of cells 10 hours after DEV2 (expression level)
During reciliation (microarray)
Differentially expressed during reciliation
Reciliation expression group profil
Time point before deciliation (expression level)
Early time point after deciliation (expression level)
Late time point after deciliation (expression level)
Trichocyst exocytosis recovery (microarray)
Differentially expressed during trichocyst exocytosis recovery
Trichocyst exocytosis recovery expression group profil
Time point before trichocyst discharge (expression level)
Time point 40 minutes after trichocyst discharge (expression level)
Time point 210 minutes after trichocyst discharge (expression level)
== Proteomic expression ==
Cilia Mass spectrometry analysis
Infraciliary Lattice Mass spectrometry analysis
Cilia membrane mass spectrometry analysis
Filters
Output
== General ==
IES accession(s)
One accession per line
File with IES accession(s)
Browse...
One accession per line (accepted file format CSV, TSV)
Keywords
separated by spaces
== Sequence properties ==
IES length (nt)
DNA GC content (%)
== IES excision timing ==
IES excision timing group
No selection
Very early
Early
Intermediate
Late
None
== Retention after CAF1 RNAi ==
Significantly retained CAF1 depletion
No selection
Yes
No
IRS CAF1 depletion
== Retention after DCL2/3 RNAi ==
Significantly retained DCL2/3 depletion (replicate 1)
No selection
Yes
No
IRS DCL2/3 depletion (replicate 1)
Significantly retained DCL2/3 depletion (replicate 2)
No selection
Yes
No
IRS DCL2/3 depletion (replicate 2)
== Retention after DCL5 RNAi ==
Significantly retained DCL5 depletion
No selection
Yes
No
IRS DCL5 depletion
== Retention after EZL1 RNAi ==
Significantly retained EZL1 depletion (replicate 1)
No selection
Yes
No
IRS EZL1 depletion (replicate 1)
Significantly retained EZL1 depletion (replicate 2)
No selection
Yes
No
IRS EZL1 depletion (replicate 2)
== Retention after PGM RNAi ==
Significantly retained PGM depletion
No selection
Yes
No
IRS PGM depletion
== Retention after SPT5m RNAi ==
Significantly retained SPT5m depletion
No selection
Yes
No
IRS SPT5m depletion
== Retention after TFIIS4 RNAi ==
Significantly retained TFIIS4 depletion
No selection
Yes
No
IRS TFIIS4 depletion
== General properties ==
Name
Aliases
Chromosome/Reference
Start
End
Nucleotide length
Cross references
Located in gene
Located in Coding sequence
Related genes
== Sequence ==
IES sequence
IES G+C content
MAC sequence junction
== IES excision timing ==
IES excision timing during autogamy
IES excision timing group
Excision score Old MAC fragments (TC2)
Excision score Old MAC fragments (TC3)
Excision score Old MAC fragments (TC4)
Excision score Old MAC fragments (TC5)
Excision score Anlagen at DEV1 32C (TC4)
Excision score Anlagen at DEV1 32C (TC5)
Excision score Anlagen at DEV2 32C (TC3)
Excision score Anlagen at DEV2 32C (TC4)
Excision score Anlagen at DEV2 64C (TC3)
Excision score Anlagen at DEV2 64C (TC4)
Excision score Anlagen at DEV2 64C (TC2)
Excision score Anlagen at DEV3 64C (TC6)
Excision score Anlagen at DEV3 64C (TC4)
Excision score Anlagen at DEV3 128C (TC4)
Excision score Anlagen at DEV4 128C (TC4)
== IES retention ==
CAF1 depletion
Significantly retained CAF1 depletion
IRS CAF1 depletion
DCL2/3 depletion
Significantly retained DCL2/3 depletion (replicate 1)
IRS DCL2/3 depletion (replicate 1)
Significantly retained DCL2/3 depletion (replicate 2)
IRS DCL2/3 depletion (replicate 2)
DCL5 depletion
Significantly retained DCL5 depletion
IRS DCL5 depletion
EZL1 depletion
Significantly retained EZL1 depletion (replicate 1)
IRS EZL1 depletion (replicate 1)
Significantly retained EZL1 depletion (replicate 2)
IRS EZL1 depletion (replicate 2)
PGM depletion
Significantly retained PGM depletion
IRS PGM depletion
SPT5m depletion
Significantly retained SPT5m depletion
IRS SPT5m depletion
TFIIS4 depletion
Significantly retained TFIIS4 depletion
IRS TFIIS4 depletion
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